Corticibacter populi gen. nov., sp. nov., a new member of the family Comamonadaceae, from the bark of Populus euramericana.
Identifieur interne : 001E28 ( Main/Exploration ); précédent : 001E27; suivant : 001E29Corticibacter populi gen. nov., sp. nov., a new member of the family Comamonadaceae, from the bark of Populus euramericana.
Auteurs : Wei Fang [République populaire de Chine] ; Yong Li [République populaire de Chine] ; Han Xue [République populaire de Chine] ; Guozhong Tian [République populaire de Chine] ; Laifa Wang [République populaire de Chine] ; Min-Wei Guo [République populaire de Chine] ; Chun-Gen Piao [République populaire de Chine]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2015.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Analyse de séquence d'ADN (MeSH), Chine (MeSH), Comamonadaceae (classification), Comamonadaceae (génétique), Comamonadaceae (isolement et purification), Composition en bases nucléiques (MeSH), Données de séquences moléculaires (MeSH), Endophytes (classification), Endophytes (génétique), Endophytes (isolement et purification), Phospholipides (composition chimique), Phylogenèse (MeSH), Populus (microbiologie), Techniques de typage bactérien (MeSH), Ubiquinones (composition chimique), Écorce (microbiologie).
- MESH :
- composition chimique : Acides gras, Comamonadaceae, Endophytes, Phospholipides, Ubiquinones.
- génétique : ADN bactérien, ARN ribosomique 16S, Comamonadaceae, Endophytes.
- isolement et purification : Comamonadaceae, Endophytes.
- microbiologie : Populus, Écorce.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Données de séquences moléculaires, Phylogenèse, Techniques de typage bactérien.
English descriptors
- KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), Comamonadaceae (classification), Comamonadaceae (genetics), Comamonadaceae (isolation & purification), DNA, Bacterial (genetics), Endophytes (classification), Endophytes (genetics), Endophytes (isolation & purification), Fatty Acids (chemistry), Molecular Sequence Data (MeSH), Phospholipids (chemistry), Phylogeny (MeSH), Plant Bark (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Ubiquinone (chemistry).
- MESH :
- chemical , chemistry : Fatty Acids, Phospholipids, Ubiquinone.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- classification : Comamonadaceae, Endophytes.
- genetics : Comamonadaceae, Endophytes.
- isolation & purification : Comamonadaceae, Endophytes.
- microbiology : Plant Bark, Populus.
- Bacterial Typing Techniques, Base Composition, China, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA.
Abstract
Three novel endophytic strains, designated 17B10-2-12T, 26C10-4-4 and D13-10-4-9, were isolated from the bark of Populus euramericana in Heze, Shandong Province, China. They were Gram-reaction-negative, aerobic, non-motile, short-rod-shaped, oxidase-positive and catalase-negative. A phylogenetic analysis of the 16S rRNA gene showed that the three novel strains clustered with members of the family Comamonadaceae and formed a distinct branch. The isolates shared 100 % similarities among themselves and had the highest sequence similarity with Xenophilus azovorans DSM 13620T (95.2 %) and Xenophilus arseniciresistens YW8T (95.0 %), and less than 95.0 % sequence similarities with members of other species. Their major fatty acids were C16 : 0, C17 : 0 cyclo, C18 : 1ω7c and C16 : 1ω7c/C16 : 1ω6c. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and three unknown aminophospholipids. The predominant quinone was ubiquinone-8 (Q-8). The DNA G+C content was 69.5–70.0 mol%. Based on data from a polyphasic taxonomy study, the three strains represent a novel species of a novel genus of the family Comamonadaceae, for which the name Corticibacter populi gen. nov., sp. nov. is proposed. The type strain is 17B10-2-12T ( = CFCC 12099T = KCTC 42091T).
DOI: 10.1099/ijsem.0.000418
PubMed: 26296923
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<term>Comamonadaceae (isolation & purification)</term>
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<term>ARN ribosomique 16S (génétique)</term>
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<term>Endophytes (génétique)</term>
<term>Endophytes (isolement et purification)</term>
<term>Phospholipides (composition chimique)</term>
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<term>Populus (microbiologie)</term>
<term>Techniques de typage bactérien (MeSH)</term>
<term>Ubiquinones (composition chimique)</term>
<term>Écorce (microbiologie)</term>
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<front><div type="abstract" xml:lang="en">Three novel endophytic strains, designated 17B10-2-12T, 26C10-4-4 and D13-10-4-9, were isolated from the bark of Populus euramericana in Heze, Shandong Province, China. They were Gram-reaction-negative, aerobic, non-motile, short-rod-shaped, oxidase-positive and catalase-negative. A phylogenetic analysis of the 16S rRNA gene showed that the three novel strains clustered with members of the family Comamonadaceae and formed a distinct branch. The isolates shared 100 % similarities among themselves and had the highest sequence similarity with Xenophilus azovorans DSM 13620T (95.2 %) and Xenophilus arseniciresistens YW8T (95.0 %), and less than 95.0 % sequence similarities with members of other species. Their major fatty acids were C16 : 0, C17 : 0 cyclo, C18 : 1ω7c and C16 : 1ω7c/C16 : 1ω6c. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and three unknown aminophospholipids. The predominant quinone was ubiquinone-8 (Q-8). The DNA G+C content was 69.5–70.0 mol%. Based on data from a polyphasic taxonomy study, the three strains represent a novel species of a novel genus of the family Comamonadaceae, for which the name Corticibacter populi gen. nov., sp. nov. is proposed. The type strain is 17B10-2-12T ( = CFCC 12099T = KCTC 42091T).</div>
</front>
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<Title>International journal of systematic and evolutionary microbiology</Title>
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<ArticleTitle>Corticibacter populi gen. nov., sp. nov., a new member of the family Comamonadaceae, from the bark of Populus euramericana.</ArticleTitle>
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<Abstract><AbstractText>Three novel endophytic strains, designated 17B10-2-12T, 26C10-4-4 and D13-10-4-9, were isolated from the bark of Populus euramericana in Heze, Shandong Province, China. They were Gram-reaction-negative, aerobic, non-motile, short-rod-shaped, oxidase-positive and catalase-negative. A phylogenetic analysis of the 16S rRNA gene showed that the three novel strains clustered with members of the family Comamonadaceae and formed a distinct branch. The isolates shared 100 % similarities among themselves and had the highest sequence similarity with Xenophilus azovorans DSM 13620T (95.2 %) and Xenophilus arseniciresistens YW8T (95.0 %), and less than 95.0 % sequence similarities with members of other species. Their major fatty acids were C16 : 0, C17 : 0 cyclo, C18 : 1ω7c and C16 : 1ω7c/C16 : 1ω6c. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and three unknown aminophospholipids. The predominant quinone was ubiquinone-8 (Q-8). The DNA G+C content was 69.5–70.0 mol%. Based on data from a polyphasic taxonomy study, the three strains represent a novel species of a novel genus of the family Comamonadaceae, for which the name Corticibacter populi gen. nov., sp. nov. is proposed. The type strain is 17B10-2-12T ( = CFCC 12099T = KCTC 42091T).</AbstractText>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Fang</LastName>
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<Author ValidYN="Y"><LastName>Xue</LastName>
<ForeName>Han</ForeName>
<Initials>H</Initials>
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<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>1339-63-5</RegistryNumber>
<NameOfSubstance UI="D014451">Ubiquinone</NameOfSubstance>
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<Chemical><RegistryNumber>CQA993F7P8</RegistryNumber>
<NameOfSubstance UI="C030778">ubiquinone 8</NameOfSubstance>
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</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D042621" MajorTopicYN="N">Comamonadaceae</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
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<MeshHeading><DescriptorName UI="D060026" MajorTopicYN="N">Endophytes</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D024301" MajorTopicYN="N">Plant Bark</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014451" MajorTopicYN="N">Ubiquinone</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2015</Year>
<Month>8</Month>
<Day>23</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2015</Year>
<Month>8</Month>
<Day>25</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2016</Year>
<Month>4</Month>
<Day>15</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">26296923</ArticleId>
<ArticleId IdType="doi">10.1099/ijsem.0.000418</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
<settlement><li>Pékin</li>
</settlement>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Fang, Wei" sort="Fang, Wei" uniqKey="Fang W" first="Wei" last="Fang">Wei Fang</name>
</noRegion>
<name sortKey="Guo, Min Wei" sort="Guo, Min Wei" uniqKey="Guo M" first="Min-Wei" last="Guo">Min-Wei Guo</name>
<name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name>
<name sortKey="Piao, Chun Gen" sort="Piao, Chun Gen" uniqKey="Piao C" first="Chun-Gen" last="Piao">Chun-Gen Piao</name>
<name sortKey="Tian, Guozhong" sort="Tian, Guozhong" uniqKey="Tian G" first="Guozhong" last="Tian">Guozhong Tian</name>
<name sortKey="Wang, Laifa" sort="Wang, Laifa" uniqKey="Wang L" first="Laifa" last="Wang">Laifa Wang</name>
<name sortKey="Xue, Han" sort="Xue, Han" uniqKey="Xue H" first="Han" last="Xue">Han Xue</name>
</country>
</tree>
</affiliations>
</record>
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